Check the ESCS2022 program!

08:30 09:00   Registration and Poster Delivery
09:00 09:05   Welcome Words
09:05 09:50   Distinguished Keynote Speaker: Alfonso Valencia - Bioinformatics: biology by other means (Chair: Monica Cabrera Pasadas)
09:50 09:55   Intro Gene/Proteins (Chair: Adrián Garcia-Moreno)
09:55 10:05 OGP_1 A knowledge graph approach for interpretable prediction of pathogenic genetic interactions - Alexandre Renaux
10:05 10:10 SGP_1 Spatial relationships in the urothelial cancer microenvironment, the potential for immune-based subtyping and ICI response prediction - Alberto Gil-Jimenez
10:10 10:15 SGP_2 The landscape of expression and alternative splicing variation across human traits - José Miguel Ramírez Cardeñosa
10:15 10:20 SGP_3 Discovery of novel CSF biomarkers to predict progression in dementia - Dea Gogishvili
10:20 10:21 FGP_1 NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction - Ali Al-Fatlawi
10:21 10:22 FGP_3 The alteration of structural network by transient association between proteins - Vasam Manjveekar Prabantu
10:22 10:23 FGP_4 Evidence-Driven Annotation of the Trichechus manatus latirostris Genome Using Long-Reads - Alejandro Paniagua de Pedro
10:23 10:24 FGP_5 Regulatory variants of blood pressure genes - Winona Oliveros Diez
10:24 10:50   Coffee Break
10:50 10:55   Intro Divulgation (Chair: Carla Perpiñá)
10:55 11:05 ODI_1 Enrichment analyses: a not so trivial set of methods that should be adjusted to your experiment - Adrian Garcia Moreno
11:05 11:15 ODI_2 A profile-guided approach for optimizing venerable bioinformatics software - Martin Larralde
11:15 11:20 SDI_1 The BioVRPi project: a valuable and sustainable alternative for genomic analysis - Mirko Treccani
11:20 11:25   Intro Omics (Chair: Irene Soler)
11:25 11:35 OOM_2 DeepResponse: a multi-omics based predictor of drug sensitivity for cancer cell-lines - Umut Onur Ozcan (Virtual)
11:35 11:40 SOM_1 Optimal transport improves cell–cell similarity inference in single-cell omics data - Geert-Jan Huizing
11:40 11:45 SOM_2 scRNA-Seq based drug repurposing for targeting alveolar regeneration in idiopathic pulmonary fibrosis - Anika Liu
11:45 11:50 SOM_3 Machine learning applied to higher order functional representations of omics data reveals biological pathways associated with Parkinson Disease - Elisa Gomez de Lope
11:50 11:55 SOM_4 A fast and robust statistical framework for gene-wise single-cell differential expression meta-analysis - Aida Ripoll-Cladellas
11:55 11:56 FOM_1 Disentangling Cellular Heterogeneity with Multimodal single-cell Integration - Jules Samaran
11:56 11:57 FOM_2 Do footprints of positive selection in E. coli genomes tell us about antibiotic resistance? - Negin Malekian Boroujeni
11:57 11:58 FOM_3 Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data - Daniel Dimitrov
11:58 11:59 FOM_4 Detection of premalignant neoantigen-specific T-cell receptors in Lynch syndrome: the needle in a haystack of immunoinformatics - Maria Soledad Benitez-Cantos
11:59 12:04   Intro Sequences (Chair: Mirco Treccani)
12:04 12:09 SSA_1 Improving multiplicity assignments in de Bruijn graphs using Loopy Belief Propagation inference on Conditional Random Fields - Aranka Steyaert
12:09 12:14 SSA_2 Where do they come from, where do they go? Prediction of protein subplastid localization and origin with PlastoGram - Katarzyna Sidorczuk
12:14 12:19 SSA_3 Highly significant improvement of protein sequence alignments with AlphaFold2 - Athanasios Baltzis
12:19 12:20 FSA_1 Organelle phylogenomics and resolution of deep nodes in Ophioglossaceae ferns - Darina Koubínová
12:20 12:25   Intro Software and Systems and Ecosystems (Chair: Monica Cabrera Pasadas)
12:25 12:30 SSD_1 SQANTISIM: a simulator of controlled novelty and degradation of transcripts sequenced by long-reads - Jorge Mestre-Tomás
12:30 12:40 OSY_2 An Agent-Based Model of Tumor-Associated Macrophage Differentiation in Chronic Lymphocytic Leukemia - Nina Verstraete
12:40 12:45 SSY_1 Patient stratification reveals the molecular basis of comorbidities - Beatriz Urda García
12:45 12:46 FSY_1 Implications of phenotypic and functional heterogeneity in cancer cells - Asadullah
12:46 12:56 OEC_2 Unraveling the molecular mechanism underlying the African trypanosomiasis disease progression - Abirami Rajavel
12:56 12:57 FEC_1 Prevalence and Specifity of Chemoreceptor Profiles in Plant-Associated Bacteria - Claudia Sanchis-López
12:57 13:00   Intro to Posters and Lunch
13:00 13:45   Poster Hang + Lunch/Coffee
13:45 14:30   Poster Visiting
14:30 14:34   Afternoon session (Chair: Ina M. Deutschmann)
14:34 14:44 OOM_1 Optimizing medulloblastoma patient substratification through multilayer network community dynamics - Iker Núñez-Carpintero
14:44 14:54 OSA_1 Lossless Approximate Pattern Matching on Pan-genome de Bruijn Graphs - Lore Depuydt
14:54 15:04 OSD_1 IsoAnnot: a pipeline for functional annotation of isoforms - Alessandra Martinez Martin
15:04 15:14 OEC_1 Modeling The Effects Of Maqui-Lemon-Based (With Different Sweeteners) Beverage Consumption: Influence Of Sex - Diego Hernández Prieto
15:14 15:24 OSY_1 Workflow for image-based simulation of morphogen gradient formation - Justina Stark
15:24 15:45   Break
15:45 16:30   Distinguished Keynote Speaker: Ana Conesa - The bioinformatics of multi-omics data integration and modelling (Chair: Ina M. Deutschmann)
16:30 16:45   Final Remarks
16:45 17:00   Group picture by the sea
17:00     End of ESCS 2022
17:30 18:00   ECCB 2022 Transition
18:00 18:30   ECCB 2022 Conference Opening
18:30 19:30   Conference Opening Keynote
19:30 10:30   Welcome Reception


*Type of presentation:  O = Oral Communication (8min + 2min QA); S = Short Talk (5min + no QA); F = Flash Talk (1min + Poster); P = Poster Only. Topics: DI = Divulgation; GP = Genes / Proteins; OM = Omics; SA = Sequence analysis; SD = Software or Data Engineering; EC = Ecosystem, Animal and Plant Sciences, Climate Crisis and Health; SY = Systems.


Date: 18th of September 2022, 9 am - 5 pm. Time Zone Central European Summer Time (CEST).  Convert your timezone here: